Starting with version 7, TrackMate can detect, store and exploit the object contours in 2D.Īlso, TrackMate integrates state-of-the-art segmentation algorithms, such as ilastik, MorphoLibJ, StarDist, and Weka.īelow you can see migrating cells tracked with the StarDist detector implemented in TrackMate.

Using state-of-the-art segmentation algorithm TrackMate also has a component to display and annotate cell lineages: TrackScheme. TrackMate is distributed in Fiji, integrates well with ImageJ and Fiji tools, and does not require a complex installation procedure. TrackMate has a user-friendly interface that allows for performing tracking, data visualization, editing results and track analysis in a convenient way. If you use it successfully for your research please be so kind as to cite our work:ĭoi:10.1016/j.ymeth.2016.09.016 Presentation Examples TrackMate user-interface Please note that TrackMate is available through Fiji, and is based on several publications.

TrackMate is your buddy for your everyday tracking.

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